I tried narrowing this down running ps on my Ubuntu setup which will allow software install and updates ... the following processes I could not spot running on my setup ...
Code:
1650 ? 00:00:00 khpsbpkt
2443 ? 00:00:00 knodemgrd_0
3283 ? 00:00:00 kmmcd
5304 ? 00:00:00 thinkpad-keys
5889 ? 00:00:00 ssh-agent
6020 ? 00:00:00 obex-data-serve
6098 ? 00:00:00 evolution-data-
6119 ? 00:00:00 evolution-excha
9285 ? 00:00:00 gnome-vfs-daemo
10615 ? 00:05:26 deluge
10865 ? 00:00:00 watchdog/1
10961 ? 00:00:00 iwl4965/0
10963 ? 00:00:00 iwl4965/1
11052 ? 00:00:00 iwl4965
26439 ? 00:00:06 gnome-system-mo
11207 ? 00:00:00 wpa_supplicant
11353 ? 00:00:00 ntpd
26103 ? 00:00:00 scsi_eh_7
26104 ? 00:00:00 usb-storage
26152 ? 00:00:00 mount.ntfs-3g
I guess things like ntfs-3g are not the problem ... less sure about ntpd and obex-data-serve. I don't think a re-install will help as you are likely to end up in exactly the same position. I'd ensure you have the updater disabled and make sure any installation processes are complete and try again. You can use kill to remove processes you suspect are still causing issues ... but this is quite drastic ... see if you still have a problem after disabling automatic updates and restarting the system.