| I have never run a server, but what about your log files? They should be under /var/log and should tell who is logged in on which machines & at what times. If it is sabotage of some kind, whoever it was probably covered their tracks by changing log files, but if it was stupidity you should be able to trace it.
If it seems like it was from outside the network, I would have all logs copied(real time, as they are created) by a script to another machine behind another firewall with no remote access. This way if there are any changes done to logs, you will have the original and the changed version, and hopefully a record of who did it.
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