Shell Script Help!!!

[brainscanfmri]

Hi -

Very new to this shell scripting/Linux scripting. I have this below and need help.


subject_dir=/labs/tricam/MERIT/MERIT_0*

for subject in `ls $subject_dir` ; do
if [ ! -d $subject_dir/$subject/feat/glm2010/doublegz/SRRTA.feat ] ; then

sed 's/MERIT_001/'${subject}'/g' dgA.fsf>${subject}dgA.fsf
feat ${subject}dgA.fsf
else
echo "$subject has already been run"
fi
done

I would like to return the directories in subject dir, but only the directory without path. i.e. MERIT_001, MERIT_002, MERIT_003

Then I would like to use the sed command in the "fsf" (a text file for another program) to replace with that list. i.e. MERIT_001 replaced with MERIT_002. Do this for all directories that start MERIT_0*.

When it creates the new file as shown, will it pull it from the right directory when feat starts (another program)?

-brainscanfmri

[nmset]

return the directories in subject dir

...
for subject in `find $subject_dir -maxdepth 0 -type d` ; do
subject=${subject##*/}
...